PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016462054.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 382aa MW: 42075.7 Da PI: 7.7612

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016462054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	52	112	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ +kl ++ +++V++WFqNr+ + k+ XP_016462054.1 52 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 112 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.7	3.8e-36	51	114	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq XP_016462054.1 51 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKQ 114 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.382	48	113	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-12	48	117	IPR009057	Homeodomain-like
SMART	SM00389	4.9E-9	50	117	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-6	51	120	IPR009057	Homeodomain-like
CDD	cd00086	4.05E-8	51	114	No hit	No description
Pfam	PF00046	4.3E-15	52	112	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MASSNRHWPS MFKSKPCNQW QHDINSSLIQ RTPCNPVGGG GGGCEERSPE PKPRWNPRPE 60 QIRILEAIFN SGMVNPPRDE IRKIRAKLQE YGQVGDANVF YWFQNRKSRS KHKQRHLQNK 120 AQQTHNNTNI THSHVAITAP SSSSSSSDKS SPNSTGHHKS SLTFSIGSAN VMDLLNSPTA 180 SVNQQQQNYN FQSANNEFLS TESFFFTVQP PTPTQSPTAI TQGFCIPDST GFSHVSNSSG 240 HLFLSEWMGI GQAPSKKAED EKINLQSQLN YAVTSAPTTN THSTVFPLTS TTIPTISHIQ 300 GVVEPTDAGP TRSTVFINDV AFEVGLGPFN VREVFGDDAV LIHSSGEPLI TNEWGLTLQP 360 LQHGAFYYLL RTSTPSNTID LI

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MASSNRHWPS MFKSKPCNQW QHDINSSLIQ RTPCNPVGGG GGGCEERSPE PKPRWNPRPE  60
QIRILEAIFN SGMVNPPRDE IRKIRAKLQE YGQVGDANVF YWFQNRKSRS KHKQRHLQNK  120
AQQTHNNTNI THSHVAITAP SSSSSSSDKS SPNSTGHHKS SLTFSIGSAN VMDLLNSPTA  180
SVNQQQQNYN FQSANNEFLS TESFFFTVQP PTPTQSPTAI TQGFCIPDST GFSHVSNSSG  240
HLFLSEWMGI GQAPSKKAED EKINLQSQLN YAVTSAPTTN THSTVFPLTS TTIPTISHIQ  300
GVVEPTDAGP TRSTVFINDV AFEVGLGPFN VREVFGDDAV LIHSSGEPLI TNEWGLTLQP  360
LQHGAFYYLL RTSTPSNTID LI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009622251.1	0.0	PREDICTED: WUSCHEL-related homeobox 9 isoform X1
Refseq	XP_016462054.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like isoform X1
TrEMBL	A0A1S3ZCJ3	0.0	A0A1S3ZCJ3_TOBAC; WUSCHEL-related homeobox 9-like isoform X1
STRING	XP_009622251.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5942	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	2e-58	homeobox-3