PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016462178.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YA

Protein Properties

Length: 103aa MW: 11370.4 Da PI: 11.0414

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016462178.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	40.5	9e-13	2	24	36	58
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58 +pylheSRh hA++R RgsgGrF XP_016462178.1 2 QPYLHESRHLHAVNRVRGSGGRF 24 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	17.626	1	27	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.8E-10	2	24	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MQPYLHESRH LHAVNRVRGS GGRFLSSKKV NQSDPNSYPT NSTSSQDSVE RENSTSAFSS 60 VRKDVNNGVS FQQQPDHRAF GVSSHMAITM QGNGAQQRAP IVR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016462178.1	1e-70	PREDICTED: nuclear transcription factor Y subunit A-6-like
TrEMBL	A0A1S3ZCP8	3e-69	A0A1S3ZCP8_TOBAC; nuclear transcription factor Y subunit A-6-like
STRING	XP_009592750.1	6e-67	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5009	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34720.1	4e-12	nuclear factor Y, subunit A4