PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462318.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 250aa    MW: 29093 Da    PI: 6.4389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.8e-1580132155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r ah  +Er+RR+++ + ++ Lr++lP  +   ++K+s ++ Le+A++YI++L+
  XP_016462318.1  80 KRIAHRDIERQRRQEMAHLYASLRSHLPLEF--LKGKPSASDHLEQAMNYIQHLE 132
                     799**************************65..9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.54179131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1280132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-980135No hitNo description
Gene3DG3DSA:4.10.280.101.6E-1080151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1380146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-685137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDPLSEIFSF HEIQDYDLYH QEIQIPSTPC QIPQQDLVKV DTNSLARNDT NKKKRSRRLL  60
SSVSKDSTSN EIMDQNKLIK RIAHRDIERQ RRQEMAHLYA SLRSHLPLEF LKGKPSASDH  120
LEQAMNYIQH LENNINDFEK KRDKLNLFAH YSNREDKESI HKYNLEEHVT VNSCQDGLEI  180
LIKNKFGKEG LPLSKVLEEL MKRKLNVVTC VSTTVDETSL HKIQVEDTDV SCMDVSTLEE  240
KLAEMMLNLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17991KRIAHRDIERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462318.10.0PREDICTED: transcription factor bHLH118-like
TrEMBLA0A1S3ZD380.0A0A1S3ZD38_TOBAC; transcription factor bHLH118-like
STRINGXP_009597785.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.14e-37bHLH family protein