PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462348.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 241aa    MW: 27999.4 Da    PI: 9.9332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.2e-0786132455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h + Er RR++ ++++  L +llP       +K +K +i++ Av  I++Lq
  XP_016462348.1  86 KHMIKERIRREKQKQSYLALHKLLPMG-----TKGEKNAIVQTAVMRIQELQ 132
                     68899********************97.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-1177146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.62E-680133No hitNo description
PROSITE profilePS5088811.10382131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-786148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-486132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEEFFQVHTS QANNGEILWF ENEAFLVNQS AFVSFRNKPI EGFGVSGYGN VSANHRNMNK  60
RMMEFLKKSW IPKVGEVKME KEKVHKHMIK ERIRREKQKQ SYLALHKLLP MGTKGEKNAI  120
VQTAVMRIQE LQKYKESLKK RNDELQMILA EGEKEEFEKA KIKVKVNYPI SGVDSMLEVL  180
KCLKNCGTKA NAMQSSFSQQ EFSSMLEIET KIGAAEVEKT VQNTLFETER NFRAHQLPMT  240
W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2585370.0AB258537.1 Nicotiana tabacum WIN4 mRNA for basic helix-loop-helix protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462348.11e-178PREDICTED: transcription factor bHLH92-like
TrEMBLA0A1S3ZD671e-177A0A1S3ZD67_TOBAC; transcription factor bHLH92-like
STRINGXP_009614938.11e-162(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124631821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-29bHLH family protein