PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462434.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 148aa    MW: 17122 Da    PI: 10.2439
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF351.9e-111556142
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    k+ ++k+  +v +s+ ++ + K A  LS+LC++++a+iifs 
  XP_016462434.1 15 KFLKDKRAEKVALSNKQKALSKRAMDLSTLCGIDIAIIIFSI 56
                    57789999********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0018166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.302767IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-5929IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-14980IPR002100Transcription factor, MADS-box
PfamPF003191.2E-91861IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-52944IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-54465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MARMTSQMKS KSEKKFLKDK RAEKVALSNK QKALSKRAMD LSTLCGIDIA IIIFSITVEP  60
FFFGNPNVES VVERFSQVNQ PIYRMSSRKM AHEKAGGCEE NDIMKKKKKK AINEEEKRES  120
TLKIFKPTNL EKFEKLKQEI DELEKDLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462434.11e-103PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S3ZDM01e-102A0A1S3ZDM0_TOBAC; agamous-like MADS-box protein AGL61
STRINGXP_009802654.14e-74(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-12AGAMOUS-like 61