PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016462866.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 135aa    MW: 15229.9 Da    PI: 5.0732
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016462866.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB163.62.8e-5111106297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqd++lPianv+rimk++lP nakisk+aketvqecvsefi+fvt+eas+kc++e+rkt+ngdd++wal+tlGf+dy  ++k +l++yre ege
  XP_016462866.1  11 KEQDHLLPIANVGRIMKQILPPNAKISKEAKETVQECVSEFIGFVTGEASEKCRKERRKTVNGDDVCWALGTLGFDDYGGAMKRFLHRYRENEGE 105
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     k
  XP_016462866.1 106 K 106
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.3E-494129IPR009072Histone-fold
SuperFamilySSF471134.97E-3613110IPR009072Histone-fold
PfamPF008084.2E-261780IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-144462No hitNo description
PRINTSPR006152.6E-146381No hitNo description
PRINTSPR006152.6E-1482100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MAQNDEGSNS KEQDHLLPIA NVGRIMKQIL PPNAKISKEA KETVQECVSE FIGFVTGEAS  60
EKCRKERRKT VNGDDVCWAL GTLGFDDYGG AMKRFLHRYR ENEGEKVNQE RVDNNSGELE  120
ERPIGGSQPR NYNLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4111101292Transcription factor HapC (Eurofung)
4g92_B3e-4111101292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462866.12e-97PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822483e-54NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1S3ZF004e-96A0A1S3ZF00_TOBAC; nuclear transcription factor Y subunit B-5-like
STRINGXP_009628180.11e-71(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-56nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]