PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016463328.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 732aa    MW: 81226.5 Da    PI: 9.6216
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016463328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-111770248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                      rW t+E++ll++av+++G+++W+++a +++         +++ +c++++++++
   XP_016463328.1 17 PRWGTWEELLLACAVNRYGTKSWDSVAVELQkrstapaRLLSPHNCRLKYLDLK 70
                     59************************************889*********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.4E-51572IPR001005SANT/Myb domain
PfamPF002496.6E-111870IPR001005SANT/Myb domain
CDDcd001672.59E-51870No hitNo description
SuperFamilySSF473703.92E-17332446IPR001487Bromodomain
SMARTSM002974.4E-16337446IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.8E-15344446IPR001487Bromodomain
CDDcd043692.36E-14351441No hitNo description
PfamPF004394.9E-12351431IPR001487Bromodomain
PROSITE profilePS5001412.388356427IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MAKPDATVEN SSEEEEPRWG TWEELLLACA VNRYGTKSWD SVAVELQKRS TAPARLLSPH  60
NCRLKYLDLK RRYSNKCNGN GNVNDDDEDK EKTVCVPLLE ELRKLRVAEL RREVERYDLS  120
IVSLQLKKQR LEEERERSLQ QTENGESKSD LAKNERRGAN DEKIEETEIG IKPEDKSSPE  180
LVADGEASEE ASDKDQQSVN ESSSTDPKHS CSLKTSAEEN EDKPEPVRTG TVKTEPLQTG  240
SIKEEPDKCA EERPVREDSC NGSSDSVEKP PIGVTMKVEP LSESAELVES VAESKGGEER  300
TKENSDVQSS VRKKVDDIVV GGCSSGDERE KENRSPAVKE IPVESQPLIA FLEKIRSHKL  360
GSMFERRLES QEAENYSNLV RQHVDLEMVQ TWLENGRYRS CKSKFFRDLL LLVSNAIVFF  420
KKNSSEFVAA KELRQLILKE ISQTKAKSYS LSDKQTSLKS ASLSQKERTK PSDSLLLKTN  480
ISGSMIVCRK RSSITAKASA SSSGGDKKRE QTITRPAEKL VVDTLQQPSQ LATNAGENRI  540
TKKRTRDRFA SGSASLNKND KSRPNTTSIK NLAAVVDKNQ GERESSSQHP QSKSESRNDQ  600
SNTDVKKRGV ANFLNRMKQS SSSNSGLLLD ALKSRPLSSG SKGGSEQKKN ESGTDGGRKE  660
PASSKTHQKK EPASSKNPEA KQAKEKGSPM KKNVGRPPKR GADPSPPSSK RSREGAESAA  720
IPPKQPKKRS RR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463328.10.0PREDICTED: uncharacterized protein LOC107786375
TrEMBLA0A1S3ZFU70.0A0A1S3ZFU7_TOBAC; uncharacterized protein LOC107786375
STRINGXP_009760270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.17e-41DNA-binding bromodomain-containing protein