PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016463686.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 267aa MW: 31406.5 Da PI: 5.002

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016463686.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.5	8.6e-14	11	49	3	41
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i+++ +r+ tf kR++ ++ K +ELS+LCd+++++ii+ XP_016463686.1 11 IQDYKKRKSTFQKRKACLINKISELSILCDIKACMIIYE 49 999**********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.1E-14	1	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.582	1	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-19	2	93	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.68E-20	2	84	No hit	No description
PRINTS	PR00404	3.2E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.4E-14	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MGRSKINMEL IQDYKKRKST FQKRKACLIN KISELSILCD IKACMIIYEG NNCEEIWPND 60 PNEVQELINL YKNQPIEDRS KRENSLSSFL ENEKKKAEIK MAKLKKKIKT EKYPTWDSRF 120 NYLSEKELRN LAGVLEKKME NAKEKTEFLK SSRNINQDSN QEIWDYPELM DNFNQSNPQP 180 ISYMDNQFFQ EFTTEFDHVN SMGILDNGQL SIDDYQFGNS DYMKIEAEDW LVNNGIIGSS 240 SRMQPMELNQ YSFISSGSTQ MPYGYLQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016463686.1	0.0	PREDICTED: agamous-like MADS-box protein AGL82
TrEMBL	A0A1S3ZH90	0.0	A0A1S3ZH90_TOBAC; agamous-like MADS-box protein AGL82
STRING	XP_009607102.1	1e-180	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6342	12	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22590.2	1e-16	AGAMOUS-like 87