PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464002.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 1049aa    MW: 118069 Da    PI: 5.8049
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.21.2e-56201363118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwl++ ei++iL n++k+++t e+++rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+ee+ +fqr
  XP_016464002.1  20 SEvQHRWLRPAEICEILRNYKKFHITPEAPHRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEEDDNFQR 114
                     5559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+yw+Le++l +iv+vhylevk
  XP_016464002.1 115 RSYWMLEQDLMHIVFVHYLEVK 136
                     *******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.79915141IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038597.4E-5022135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.3E-5461549IPR013783Immunoglobulin-like fold
PfamPF018331.2E-6463548IPR002909IPT domain
SuperFamilySSF812961.71E-17463549IPR014756Immunoglobulin E-set
SuperFamilySSF484038.71E-18645757IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.961646767IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.8E-17646759IPR020683Ankyrin repeat-containing domain
CDDcd002041.70E-15659755No hitNo description
SMARTSM002483400663692IPR002110Ankyrin repeat
PROSITE profilePS500888.816663695IPR002110Ankyrin repeat
SMARTSM002480.0036696725IPR002110Ankyrin repeat
PROSITE profilePS500889.484696728IPR002110Ankyrin repeat
SMARTSM00248900735764IPR002110Ankyrin repeat
SMARTSM000155870892IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.19E-7870921IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.968871900IPR000048IQ motif, EF-hand binding site
PfamPF006120.0048872891IPR000048IQ motif, EF-hand binding site
SMARTSM000159.4E-4893915IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56894918IPR000048IQ motif, EF-hand binding site
PfamPF006127.6E-5896915IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1049 aa     Download sequence    Send to blast
MADCGSDPSG FRLDITQILS EVQHRWLRPA EICEILRNYK KFHITPEAPH RPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKA NMGCVRSIKS AHSNYLNDCS LSDSFPRGHK KLASANADST  180
SVASTLTSAH EEAESEDSHQ ACSRFQSYPE RASGMDRNLV ENRDTIYSSY GSPQSSVEYT  240
SLPGIDVGEK CGLGNFASGP QRTIDLGSQE PVSQHCSNGE IVCQDDFKNN LSVKGNWQII  300
YLSSPCPCFP SFYVPXDLVN SFHNKNLSSD LYTGRGQSYL YPDEQEEQLT QLNIQYLNSL  360
VEVQGDFNQE NSMDMLGLGD YYTIKQPHLN SVKMEEGLKK VDSFSRWVVK ELEDVEELHM  420
QPTNRISWNV IDTLDDGSCL PTQLHVDSDS LNPSLSQEQV FSIIDFSPNW AYSNLETKVL  480
ITGRFLKSEG ELIECKWSCM FGEIEVPAEV LADGVLRCHA PPHKPGVLPF YVTCSNRLAC  540
SEVREFEYRL GAYQEFGAAN VSATEMHLLE RIESLLSLEP LSSCHSSDSM EAAKEKQSTV  600
NRIICMMEEE NQQMIERASD HDTSQCGVKE DLFLERKLKQ NFYAWLVRQV TDDGRGRTAI  660
DDEGQGVLHL AAALGYDWAL KPILASGVSV DFRDMNGWTA LHWAAFYGRE KTVVGLVSLG  720
ASPGALTDPS AEFPLGRTPA DLASANGHKG ISGFLAESSL TTHLSKLTVT DAKEELASEV  780
SGAKVGETVT ERVAVTTTGD DMPDVLSLKD SLAAIRNATQ AAARIHQIFR VQSFQRKQII  840
ECSDNELSSD ENALSIVASR ACKLGQNNGI AHAAATQIQK KFRGWNKRKE FLLIRQKIVK  900
IQAHVRGHQV RKKYKPIIWS VGILEKVILR WRRKRSGLRG FRSEVVMNKP IIQDDSLPED  960
DYDFLKEGRK HTEVRMQKAL ARVKSMTQYP EGRAQYRRLL TAAEGLREVK PDGPTCILES  1020
PEDTSYPEEE LFDVENLLDD DTFMSIAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5588100.0JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464002.10.0PREDICTED: calmodulin-binding transcription activator 2-like
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1S3ZIB80.0A0A1S3ZIB8_TOBAC; calmodulin-binding transcription activator 2-like
STRINGXP_009600617.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]