PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016464357.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 328aa MW: 37084.6 Da PI: 6.0577

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016464357.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.4	5.7e-39	62	161	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++ +++am+++++++++ra+dPv G++++i++lq++++ kael+ XP_016464357.1 62 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQRHIDYCKAELD 156 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ XP_016464357.1 157 IVLHQ 161 88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.198	61	162	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-36	62	157	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MQNQITTIST SIPNHHHTTH TTFATANNLN HNYSTKRVNN NNNNNNNNNK NVLLRVNGTG 60 QACAACKYQR RKCAPDCVLA PYFPHDRQRQ FLNAHKLFGV SNITKIIRHL DQPLKDEAMR 120 TIIFQSDVRA NDPVGGCYRI IRDLQRHIDY CKAELDIVLH QLAYCRAQAV AAAAAASEQQ 180 ILADHHATEE SFNENNCDGV VNQADPLVNN NASSYDQQTI DYHPHSYYNH TSCQQGEDDQ 240 QYDEIQDGQL DLADINFPWS LHEQESTSTS TPNSLMKQLS VHEQCDNIKP ILEGITGFGE 300 EGLSFEHDQA FDQHSYSTRE HSPIEGRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-26	58	156	7	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-26	58	156	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016464357.1	0.0	PREDICTED: LOB domain-containing protein 22-like
TrEMBL	A0A1S3ZJ77	0.0	A0A1S3ZJ77_TOBAC; LOB domain-containing protein 22-like
STRING	XP_009789767.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-52	LOB domain-containing protein 22