PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464869.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 226aa    MW: 25918.7 Da    PI: 9.8138
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-191172157
                    TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r +R+++ +eql  Lee+++k  r+p+a++++ ++++l    +++ ++V++WFqN++a++++
  XP_016464869.1 11 RPTRWSPAPEQLMFLEEMYRKgLRNPNATQIQNITAHLssygKIEGKNVFYWFQNHKARDRQ 72
                    569*****************99*************************************996 PP
2Wus_type_Homeobox112.22.8e-361373464
  Wus_type_Homeobox  4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       tRW+P peQ++ Lee+y++Glr+Pn+ +iq+ita+L++yGkie+kNVfyWFQN+kaR+rqk
     XP_016464869.1 13 TRWSPAPEQLMFLEEMYRKGLRNPNATQIQNITAHLSSYGKIEGKNVFYWFQNHKARDRQK 73
                       8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.398873IPR001356Homeobox domain
SMARTSM003897.1E-51077IPR001356Homeobox domain
SuperFamilySSF466891.45E-101173IPR009057Homeodomain-like
CDDcd000863.29E-41173No hitNo description
PfamPF000466.4E-171172IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-61472IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSFLKREKMT RPTRWSPAPE QLMFLEEMYR KGLRNPNATQ IQNITAHLSS YGKIEGKNVF  60
YWFQNHKARD RQKLKKKLLA QMNQQQFFSQ YPVDAHSTTT TSTNTNNLFH CPTDHYSHNS  120
SSVVNQICPI SSSGLLQEGG IKDESSRVMT YLYPMDISRP VENIENCMIR PYGKDWVLMM  180
NISPNTLPCI NKPLKTLPLF PITETNGLKE QISTKSASTL SLSFSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6281721e-102FJ628172.1 Petunia x hybrida cultivar W138 WOX3 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618151.11e-171PREDICTED: WUSCHEL-related homeobox 3-like
RefseqXP_016464869.11e-171PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1S3ZKN41e-169A0A1S3ZKN4_TOBAC; WOX3b
STRINGXP_009618151.11e-170(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-38WOX family protein