PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016465559.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 654aa    MW: 72528.9 Da    PI: 6.4659
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016465559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.82.8e-24240293155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt+ LH++F+ea++ + G +kA+Pk+il+ mkv+gLt+e+v+SHLQkYR+
  XP_016465559.1 240 KAKVVWTSSLHNKFLEAIRDI-GFDKAVPKKILDQMKVPGLTRENVASHLQKYRI 293
                     6799*****************.********************************6 PP
2Response_reg63.21.3e-21511581109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vdD+ + +++++ +l+k +y +v +++++ +al +l+ k   +Dl+++D+ mp+m+G+el + i+ e  +lp+++++a ++e ++l+ l+ G
  XP_016465559.1  51 ILVVDDDVVCLSIVAMILKKCKY-QVMTVKHPMDALSILRIKGgsFDLVVVDVHMPDMNGFELQQVITDEF-ELPVVLMSADDKEGTILKGLDGG 143
                     89*********************.***************666666**********************9999.9********************98 PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a  f+ Kp++ ++l++
  XP_016465559.1 144 AA-FFLKPISVDDLRD 158
                     86.778****999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.99E-2748164IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-2948171No hitNo description
SMARTSM004481.8E-2249160IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.53550164IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-1851158IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.18E-2152161No hitNo description
PROSITE profilePS5129410.901237296IPR017930Myb domain
SuperFamilySSF466892.15E-17238297IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-24239297IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-24240293IPR006447Myb domain, plants
PfamPF002497.7E-6243292IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MEGLLALAWK FGLQCLLHIQ KSRGSSGRRR HTVNLCQSME VETLINKSIS ILVVDDDVVC  60
LSIVAMILKK CKYQVMTVKH PMDALSILRI KGGSFDLVVV DVHMPDMNGF ELQQVITDEF  120
ELPVVLMSAD DKEGTILKGL DGGAAFFLKP ISVDDLRDLW QYTLLQKKKG KRVVLEEIDC  180
LEKSSNCNKK SLHEVGESAS SINENYYQHI KKEKSKRKPA RTQRNADKDN SGNSAALFKK  240
AKVVWTSSLH NKFLEAIRDI GFDKAVPKKI LDQMKVPGLT RENVASHLQK YRIFLERVSD  300
ACCRIQAADT NLAIKAVQST FASGMLSQEK IGLQKQFSEN TTNPRSLIHT ANNGSSSFRT  360
QQTRQAIPLG YEQAQLFLNE GILGNITHSN EIPLYKANQL TSTMKANNYQ TGTSAYEDIS  420
SQLMNGTTST QVRRMLSRVP ANRLSDRNLL ALGTNGITKH ATLNGNLNFL HDGFADDQCG  480
TNFTQNNDAD EASTLFAGLM NFIGKSQHDS EQCLAQEASS SVGFDGEKQC SAILSDHIDE  540
DTSMQLPSFV NDVCRGQEVD ATLNPVCNFS EFHNINATQQ SRGIGDLSVP FVNQGNVQPH  600
QQQEHIGHSE PAEDGMSQLH NVFSYPTEQC KNEQFLELVL ASSPYEGDQN PDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-19239299464ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494882e-36AC149488.1 Solanum demissum chromosome 11 clone PGEC542, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465559.10.0PREDICTED: two-component response regulator ORR24-like isoform X2
TrEMBLA0A1S3ZMN90.0A0A1S3ZMN9_TOBAC; two-component response regulator ORR24-like isoform X2
STRINGXP_009771678.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-50response regulator 2