PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016465935.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 245aa    MW: 27455.3 Da    PI: 9.9824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016465935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH375.9e-1269120154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ +hn+ Er RR++ Ns  + Lr+llP  +   + kK s   ++ ++++YI +L
  XP_016465935.1  69 KKLNHNASERDRRKKFNSLCSSLRSLLPAtD---HTKKISFPVTVARVIKYIPDL 120
                     6789*************************55...7777**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.82468120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1069134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-1369137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-969120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-674126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MMAVSSPLFS NFGVCLADPK NKKLNTIEAP LSTGIPVHYS SSQPSIVHSE FKNFEEINGD  60
NDHLDGTVKK LNHNASERDR RKKFNSLCSS LRSLLPATDH TKKISFPVTV ARVIKYIPDL  120
KKEVGGLTQK KEDLTLRSIP KKEYSADFNN KQTIIKGGIQ SSLSVISANQ VGNREVIIHI  180
SILKTNKSSF AEAVSELEEE GLLLLNASSF ETLGDRVFYN LHFQAGHYIS RHPSRREAKW  240
MRPFT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774484.10.0PREDICTED: transcription factor bHLH100-like isoform X2
RefseqXP_016465935.10.0PREDICTED: transcription factor bHLH100-like isoform X2
TrEMBLA0A1S3ZN200.0A0A1S3ZN20_TOBAC; transcription factor bHLH100-like isoform X2
TrEMBLA0A1U7WIK50.0A0A1U7WIK5_NICSY; transcription factor bHLH100-like isoform X2
STRINGXP_009774483.11e-162(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-32bHLH family protein