PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016465936.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 224aa MW: 24889.4 Da PI: 9.3717

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016465936.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	5.1e-12	69	120	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er RR++ Ns + Lr+llP + + kK s ++ ++++YI +L XP_016465936.1 69 KKLNHNASERDRRKKFNSLCSSLRSLLPAtD---HTKKISFPVTVARVIKYIPDL 120 6789***********************55...7777************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.824	68	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.7E-11	69	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-13	69	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-9	69	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-6	74	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MMAVSSPLFS NFGVCLADPK NKKLNTIEAP LSTGIPVHYS SSQPSIVHSE FKNFEEINGD 60 NDHLDGTVKK LNHNASERDR RKKFNSLCSS LRSLLPATDH TKKISFPVTV ARVIKYIPDL 120 KKEVGGLTQK KEDLTLRSIP KKEYSADFNN KQTIIKGGIQ SSLSVISANQ VGNREVIIHI 180 SILKTNKSSF AEAVSELEEE GLLLLNASSF ETLGDRVFYN LHFQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774483.1	1e-163	PREDICTED: transcription factor bHLH100-like isoform X1
Refseq	XP_009774484.1	1e-163	PREDICTED: transcription factor bHLH100-like isoform X2
Refseq	XP_009774485.1	1e-163	PREDICTED: transcription factor bHLH100-like isoform X3
Refseq	XP_016465934.1	1e-163	PREDICTED: transcription factor bHLH100-like isoform X1
Refseq	XP_016465935.1	1e-163	PREDICTED: transcription factor bHLH100-like isoform X2
Refseq	XP_016465936.1	1e-163	PREDICTED: transcription factor bHLH100-like isoform X3
TrEMBL	A0A1S3ZN20	1e-162	A0A1S3ZN20_TOBAC; transcription factor bHLH100-like isoform X2
TrEMBL	A0A1S3ZNI3	1e-162	A0A1S3ZNI3_TOBAC; transcription factor bHLH100-like isoform X3
TrEMBL	A0A1S3ZNR3	1e-162	A0A1S3ZNR3_TOBAC; transcription factor bHLH100-like isoform X1
TrEMBL	A0A1U7W795	1e-162	A0A1U7W795_NICSY; transcription factor bHLH100-like isoform X1
TrEMBL	A0A1U7WIK5	1e-162	A0A1U7WIK5_NICSY; transcription factor bHLH100-like isoform X2
TrEMBL	A0A1U7WJR0	1e-162	A0A1U7WJR0_NICSY; transcription factor bHLH100-like isoform X3
STRING	XP_009774483.1	1e-162	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-32	bHLH family protein