PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466123.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 326aa    MW: 38132.6 Da    PI: 8.6781
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.41.4e-2155137286
        trihelix   2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W++qe+++ i++r e+e++++++k  + k+lWe v++km+erg++rs +qCk+kw+nl + yk  + ++ ++      ++++fd+l+
  XP_016466123.1  55 WSNQETRDFIAIRGELEREFSSAKrsSWKNLWEMVAAKMKERGYRRSGEQCKSKWKNLVNSYKGKESSDPDN----GGQFQFFDELH 137
                     *********************8642277************************************99999984....34588999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.00247113IPR017877Myb-like domain
SMARTSM007170.002851115IPR001005SANT/Myb domain
PfamPF138371.4E-2154139No hitNo description
Gene3DG3DSA:1.10.10.605.3E-454114IPR009057Homeodomain-like
CDDcd122035.57E-2255120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MFGGGDNENL GPFPQRLMFP NLPLHLLPGA SISTATAAVA GDDEFPKRDE RVPPWSNQET  60
RDFIAIRGEL EREFSSAKRS SWKNLWEMVA AKMKERGYRR SGEQCKSKWK NLVNSYKGKE  120
SSDPDNGGQF QFFDELHALF TASTNNVHQL QLESEAGSQQ ERKRPRRRIR DQSSEEVSED  180
DEGYACESDE VKLAKSSIAP KKKIEKEKRP RTNNAVKPSR QPSLGSTNTT GRTVENIQEI  240
LKDFFQQQLR IEMQWRETME KRAREREVFE QEWRSSMEKL ERDRMMIEHA WREREEQRRM  300
REESRAERRD ALLTTLLNKL IGENHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163169RPRRRIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466123.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A1S3ZPD60.0A0A1S3ZPD6_TOBAC; trihelix transcription factor GT-3b-like
STRINGXP_009789032.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101331923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.17e-30Trihelix family protein