PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016466229.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 450aa MW: 49196.9 Da PI: 10.5622

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016466229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.0003	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H XP_016466229.1 30 YSCSFCKREFRSAQALGGHMNVH 52 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.44E-6	27	56	No hit	No description
PROSITE profile	PS50157	11.24	30	57	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.006	30	52	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.1E-5	30	53	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MDEYSSQYSM WMKSKTIHVG AGLIWPPRCY SCSFCKREFR SAQALGGHMN VHRRDRARLK 60 QSLSPQNEAL SQSHSKSLSK RHKQSPARNS KSASLTLSSA VISKFSHLAF SPEIKELAAG 120 QKIMSSSQPD WLNSKAAVRV LSSTKQDFNR YGDKKLKGAG KKFILLDDDA NSSSVGVSAS 180 KRQKSCMVSS LPMLHKPCSS HEKYSFTTSD YKVGNRTSSM EDIDLELRLA IGDPPAKQLV 240 TLVAAEGNSE GIEGNTSEFG GCNNRRISTW RWGDRKYGIA SAERQAQKRR GEELPGVACA 300 KEVSYLRCPQ KLSTTRKSGR RPQKRTWVRK CAHANPVTDD AAPGADVARG RGRGQRGALA 360 AARASTRAAV EEPPVAPETL AQFLSMFSIL AEAGLIPIAP ATSQTRRGTK TPAAHTPEQR 420 VHVGQVSCVM VTQPVIPAQP VVRTAVFEEE

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MDEYSSQYSM WMKSKTIHVG AGLIWPPRCY SCSFCKREFR SAQALGGHMN VHRRDRARLK  60
QSLSPQNEAL SQSHSKSLSK RHKQSPARNS KSASLTLSSA VISKFSHLAF SPEIKELAAG  120
QKIMSSSQPD WLNSKAAVRV LSSTKQDFNR YGDKKLKGAG KKFILLDDDA NSSSVGVSAS  180
KRQKSCMVSS LPMLHKPCSS HEKYSFTTSD YKVGNRTSSM EDIDLELRLA IGDPPAKQLV  240
TLVAAEGNSE GIEGNTSEFG GCNNRRISTW RWGDRKYGIA SAERQAQKRR GEELPGVACA  300
KEVSYLRCPQ KLSTTRKSGR RPQKRTWVRK CAHANPVTDD AAPGADVARG RGRGQRGALA  360
AARASTRAAV EEPPVAPETL AQFLSMFSIL AEAGLIPIAP ATSQTRRGTK TPAAHTPEQR  420
VHVGQVSCVM VTQPVIPAQP VVRTAVFEEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	3e-12	25	52	2	29	superman protein
2l1o_A	3e-12	25	52	2	29	Transcriptional regulator SUPERMAN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016466229.1	0.0	PREDICTED: uncharacterized protein LOC107788989
TrEMBL	A0A1S3ZPJ6	0.0	A0A1S3ZPJ6_TOBAC; uncharacterized protein LOC107788989
STRING	XP_009765708.1	1e-123	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14004	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	1e-21	C2H2 family protein