PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466263.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 284aa    MW: 31314.2 Da    PI: 4.5573
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466263.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.00019160206455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +   +rrR  ri ++++ L el P +     kK   a+   +++++Ik+Lq
  XP_016466263.1 160 RAALSDRRRKMRIAERIDALGELFPCS-----KKGGRASLMDEVIDHIKNLQ 206
                     556779********************9.....7888899999********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-7154213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.53E-7154210No hitNo description
SuperFamilySSF474592.88E-9155214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.909156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGEQSQPNAL ETQWAFLGGT NDSYYLAGHE LNKQYMAGVG IDGMHYVSVP SPQWIHDQQT  60
PQNYVEYLAE NVVSEVQVDA SAEASGFRVV DSSADIISQE IRYPSPYFEG VPLDFLIGSE  120
SQVGALTWEP AGDARLASGP CSEALAAGSS YLSKSSRKAR AALSDRRRKM RIAERIDALG  180
ELFPCSKKGG RASLMDEVID HIKNLQFQIK DLSWSRLGGE PSSIPFLFVE GCGHYILDEQ  240
LIEPLEETLG KLLEVNPSMA TQLLENKGLF FMPMTLAEGM HHHE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754485e-91HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466262.10.0PREDICTED: transcription factor bHLH69-like isoform X2
RefseqXP_016466263.10.0PREDICTED: transcription factor bHLH69-like isoform X2
TrEMBLA0A1S3ZPH50.0A0A1S3ZPH5_TOBAC; transcription factor bHLH69-like isoform X2
STRINGXP_009594402.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.14e-17LJRHL1-like 2