PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466457.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 132aa    MW: 14935.2 Da    PI: 4.4211
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.1e-13331061696
                     EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     + lp k + e   g     ++  ++ + sg++W++ +  ++  +r  +++GWk+Fv++n+Lk gD +vF+l + s++++++kv
  XP_016466457.1  33 MFLPAKICPELtpG-----EV-PVVLTCSGKKWDMCC--SGDYRR-RFKQGWKNFVNDNNLKIGDGLVFELLQCSRAKMTFKV 106
                     66666666555322.....22.2456679********..444444.4899********************7754555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-1515110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-1615109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-1616110No hitNo description
SMARTSM010190.003317112IPR003340B3 DNA binding domain
PROSITE profilePS5086312.12518112IPR003340B3 DNA binding domain
PfamPF023622.2E-1132106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MADSEDEDIS PLCGKPYFDF ILGESNLEPK YMMFLPAKIC PELTPGEVPV VLTCSGKKWD  60
MCCSGDYRRR FKQGWKNFVN DNNLKIGDGL VFELLQCSRA KMTFKVQILR GDFPAELMTE  120
PEDGTAENPI VL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018630850.17e-95PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A1S3ZQ224e-93A0A1S3ZQ22_TOBAC; B3 domain-containing protein Os04g0386900-like
STRINGXP_009617043.12e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-08related to vernalization1 1