PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466550.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 304aa    MW: 33714.4 Da    PI: 6.4351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466550.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.1e-28138197258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     +Dgy+WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp v+e+tY+++H++
  XP_016466550.1 138 EDGYTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLDNDPYVFEVTYRSQHTC 197
                     7****************************999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-27135198IPR003657WRKY domain
SuperFamilySSF1182901.83E-25136199IPR003657WRKY domain
SMARTSM007741.5E-36137199IPR003657WRKY domain
PfamPF031065.8E-26138197IPR003657WRKY domain
PROSITE profilePS5081120.828138195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDETTATILY GCKLAKELEA NLPNWANQPH LTLNKTEEIV AVFNNVKERL SYHHHHQQAL  60
EFFHAAEMLG ERPATAAFAV HGLPLAQESD QVGVSDSSRG GGSSSSSSQR QRRRPGDTDT  120
RTVRVAAPRM GNLELPPEDG YTWRKYGQKE ILGSRFPRAY YRCTHQKLYN CPAKKQVQRL  180
DNDPYVFEVT YRSQHTCYMS ATAPTVPPPS VEEITHQTTT ILPPPLPDFG HSTGGSLASI  240
CNVESRDGGA GPSGGRYGRE VDYQLPVVDM ADAMFNYSGS SSNNSMDIIF SSIDDKWDSA  300
EKKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-17138197968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754454e-76HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466550.10.0PREDICTED: WRKY transcription factor 55-like
TrEMBLA0A1S3ZPU30.0A0A1S3ZPU3_TOBAC; WRKY transcription factor 55-like
STRINGXP_009793195.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-51WRKY DNA-binding protein 55