PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466700.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 404aa    MW: 44057 Da    PI: 7.758
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466700.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.76e-40612132137
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsss 87 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+++         s        ++++ss++ +++ 
  XP_016466700.1  61 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAAPSISELPSLnafqdtqqiS--------EDKRSSAGTEQGL 147
                     689*************************************************************6554443221........2222222222222 PP

             TCP  88 g...............kaaksaakskksqksaasalnlak.esrakarararertrekmriknkln 137
                     +                + +++a+s+ s++s+ s l+l++ e r kar+rarer +ek + k+k+n
  XP_016466700.1 148 DsaevemdgdpnyqqhVSLSKSACSSTSETSKGSGLSLSRsENRVKARERARERAAEKEKEKEKEN 213
                     24445556666666756666666999999999999*****9*******************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-4062208IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18163121IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.972188207IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEVDEIQKQG CKFPRISNGN GRFESQDENE AVKGSNGLGG GGIGRLCGWP SNRSVRVSRA  60
SGGKDRHSKV WTSKGLRDRR VRLSVNTAIQ FYDLQDRLGY DQPSKAVEWL LKAAAPSISE  120
LPSLNAFQDT QQISEDKRSS AGTEQGLDSA EVEMDGDPNY QQHVSLSKSA CSSTSETSKG  180
SGLSLSRSEN RVKARERARE RAAEKEKEKE KENESTRTAH HQNVHRISQN SSFTELLTGG  240
LLGLRGNDNS TSGFQAQVHL GNPIQQQPLP VSSPMFSITG DHPPELQHFP FLSDHLGTNG  300
HASNSANEYN LNFSISSSSS SGLAGYNRGT LQSNCSSLLP HFQRYEGSQS FFNGSTIDAA  360
TAPNNTAAAS VDNHHHFLSA YDAGRLQLFY NDSRHSDQKG KGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2468122155Putative transcription factor PCF6
5zkt_B9e-2468122155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466700.10.0PREDICTED: transcription factor TCP24-like isoform X2
TrEMBLA0A1S3ZQ870.0A0A1S3ZQ87_TOBAC; transcription factor TCP24-like isoform X2
STRINGXP_009784722.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-37TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2