PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466982.1
Common NameERF115
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 229aa    MW: 26022.9 Da    PI: 8.4638
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466982.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-15106155254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     +y GV +++ +g + AeIrdp  +g  +r +lg++ t+e+Aa a+++a+ k++
  XP_016466982.1 106 RYIGVKRRP-WGTFSAEIRDPERRG--ARLWLGTYETPEDAALAYDQAAFKIR 155
                     699***9*9.**********84444..***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.22E-25106166No hitNo description
SMARTSM003801.4E-28106170IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-20106165IPR016177DNA-binding domain
PROSITE profilePS5103221.957106164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-28106165IPR001471AP2/ERF domain
PfamPF008472.1E-10106155IPR001471AP2/ERF domain
PRINTSPR003672.5E-7107118IPR001471AP2/ERF domain
PRINTSPR003672.5E-7130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MNPNNATFSF SELDFLQSIE NHLLNYDSDF SEILSPMSSS NALPNSPSSS FGSFPSAENS  60
LDTSLWDENF EETIPNLQLE EKSESEEETK GHVVAREKTT TQDWRRYIGV KRRPWGTFSA  120
EIRDPERRGA RLWLGTYETP EDAALAYDQA AFKIRSSRAR LNFPHLIGSN MPKPARVTAR  180
RSRTRSPEPS SSSCTSSSEK GTRKRKIDLI NSIAKAKFIR HSWNLQMLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-24105164160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-24105169468ATERF1
3gcc_A4e-24105169468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8281490.0AB828149.1 Nicotiana tabacum ERF115 mRNA for ethylene response factor 115, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312404.11e-168ethylene-responsive transcription factor 2-like
TrEMBLS0BDM41e-166S0BDM4_TOBAC; Ethylene response factor 115
STRINGXP_009628238.11e-124(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-32ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Shoji T,Kajikawa M,Hashimoto T
    Clustered transcription factor genes regulate nicotine biosynthesis in tobacco.
    Plant Cell, 2010. 22(10): p. 3390-409
    [PMID:20959558]