PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016467173.1

Common Name

NtabSPL6-1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 542aa MW: 59655.3 Da PI: 8.296

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016467173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.6	3.1e-42	186	262	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gC +dls++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rL++hnerrrk+q+ XP_016467173.1 186 CQVQGCGKDLSSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLSGHNERRRKPQT 262 **************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.9E-34	180	247	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.872	183	260	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.23E-39	184	263	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.8E-31	186	259	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MESWSYVSGG GKGFVSEESV SIGATQCIKL PLCAGYGERP DYKESVSVDD GISLGKNRVN 60 GWELNTPCSW RNSMGWSSNE GVKNQDFAET RSQDLMRKSL PNNQIRDAMS SKLGGQRSFV 120 SIRVPHNAFS GEDETSSVVE SNCKESSLID LKLGSFKSPN IIPNLSSTAP AKRNRAGGLS 180 SHTPFCQVQG CGKDLSSCKD YHKRHKVCEV HSKTAKVIVN GIEQRFCQQC SRFHLLAEFD 240 DGKRSCRKRL SGHNERRRKP QTGLHPGRAG RLLQSYAGTR FQGTPFATSS FICQDILGSG 300 LLHQPKHDMH DWYKNLKVEH SSDYSPQLTM PFTNGHSQPR PLFSTSYHTD KHPPALHEGI 360 TAITRSKTNE SSNSYLNDIE GSDFVSRSLF HNTSIGSEVL NVMDSASTFQ GISNSGCALS 420 LLSSQSQDSS NYSSLVPNAH HLITPRSNAH YNVTQTSEKF PGVNLKDSTS NASSIFNLSG 480 AISAEDGMEQ ILRNNCGING SIHGSDYVNT KNLLSCEDGP TIDLLQLSSQ LHRVEHQRHF 540 MK

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MESWSYVSGG GKGFVSEESV SIGATQCIKL PLCAGYGERP DYKESVSVDD GISLGKNRVN  60
GWELNTPCSW RNSMGWSSNE GVKNQDFAET RSQDLMRKSL PNNQIRDAMS SKLGGQRSFV  120
SIRVPHNAFS GEDETSSVVE SNCKESSLID LKLGSFKSPN IIPNLSSTAP AKRNRAGGLS  180
SHTPFCQVQG CGKDLSSCKD YHKRHKVCEV HSKTAKVIVN GIEQRFCQQC SRFHLLAEFD  240
DGKRSCRKRL SGHNERRRKP QTGLHPGRAG RLLQSYAGTR FQGTPFATSS FICQDILGSG  300
LLHQPKHDMH DWYKNLKVEH SSDYSPQLTM PFTNGHSQPR PLFSTSYHTD KHPPALHEGI  360
TAITRSKTNE SSNSYLNDIE GSDFVSRSLF HNTSIGSEVL NVMDSASTFQ GISNSGCALS  420
LLSSQSQDSS NYSSLVPNAH HLITPRSNAH YNVTQTSEKF PGVNLKDSTS NASSIFNLSG  480
AISAEDGMEQ ILRNNCGING SIHGSDYVNT KNLLSCEDGP TIDLLQLSSQ LHRVEHQRHF  540
MK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-29	180	259	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LC073302	0.0	LC073302.1 Nicotiana tabacum NtabSPL6-1 mRNA for squamosa promoter binding protein NtabSPL6-1, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312411.1	0.0	squamosa promoter-binding-like protein 6
TrEMBL	A0A125SZP1	0.0	A0A125SZP1_TOBAC; Squamosa promoter binding protein NtabSPL6-1
STRING	XP_009786196.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5187	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	4e-50	SBP family protein

Publications ? help Back to Top
Han YY,Ma YQ,Li DZ,Yao JW,Xu ZQ Characterization and phylogenetic analysis of fifteen NtabSPL genes in Nicotiana tabacum L. cv. Qinyan95. Dev. Genes Evol., 2016. 226(1): p. 1-14 [PMID:26635304]