PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016467241.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 240aa    MW: 27182.6 Da    PI: 6.3064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016467241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.7e-1569115354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+E+rRRdriN  +++Lr+l+P++     +K++Ka+ L+ +ve++k+L
  XP_016467241.1  69 RSHSEAEKRRRDRINAQLSTLRKLIPSS-----EKMDKAALLRSVVEHVKDL 115
                     78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.56466115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-1269116No hitNo description
SuperFamilySSF474592.49E-1469126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-1369115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1669118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1372121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.32E-6154202No hitNo description
Gene3DG3DSA:3.30.70.2601.8E-5154216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MMDNSSCSEY WPETETETHF HHFQEVAAAS PFVLPLVPNS CDDTSFQLYE NPCYWSQQFE  60
EDTSASASRS HSEAEKRRRD RINAQLSTLR KLIPSSEKMD KAALLRSVVE HVKDLKGRAK  120
EISKVVNTPT DIDEVIIEHL DEDENSSNSI ILKVCLCCDD RPDLFSELNR ALNNLKLTTE  180
EANITSLGGR IKCVFVLKSV NGVCLNSLKH SLSRIAISPS TSNYHIKSKR QRFFLPANFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231KSKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755183e-36HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016467241.11e-178PREDICTED: transcription factor bHLH51-like
TrEMBLA0A1S3ZS511e-177A0A1S3ZS51_TOBAC; transcription factor bHLH51-like
STRINGXP_009787651.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.19e-37bHLH family protein