PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016467452.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 154aa MW: 17007.4 Da PI: 9.0624

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016467452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	78.4	1.9e-24	11	121	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssasec 73 +r+ ++h kv+g+dRR Rl+ +ca r+F L+++LG+++ + tieWLl qa+ +i ++ + XP_016467452.1 11 PSTRTRDRHLKVNGKDRRFRLPTSCAQRVFSLTEKLGHKTVGCTIEWLLMQAESSINAILAKkisalpspqrlppvvessiptsthrN------- 98 578********************************************************99966555444433333332221111110....... PP TCP 74 eaesssssasnsssg.....................k 89 + + XP_016467452.1 99 --------------RsvqlppfvfchglelgdmefsR 121 ..............12333344444444444444330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.2E-23	14	137	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	18.74	15	69	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MDVAPPPPPP PSTRTRDRHL KVNGKDRRFR LPTSCAQRVF SLTEKLGHKT VGCTIEWLLM 60 QAESSINAIL AKKISALPSP QRLPPVVESS IPTSTHRNRS VQLPPFVFCH GLELGDMEFS 120 REEVERFAST TTSSESVGSS LASQHMNASN EKIC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016467452.1	1e-110	PREDICTED: transcription factor TCP20-like
TrEMBL	A0A1S3ZSW5	1e-109	A0A1S3ZSW5_TOBAC; transcription factor TCP20-like
STRING	XP_009616535.1	3e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15672	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-18	TCP family protein