PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016467485.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TALE
Protein Properties Length: 365aa    MW: 40805.4 Da    PI: 8.4725
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016467485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-091601922254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++yp+ +++  LAk++gL+ +qV++WF N R +
  XP_016467485.1 160 HPYPTDSDKVMLAKQTGLSRNQVSNWFINARVR 192
                     89*****************************88 PP
2BELL100.41.4e-322291372
            BELL  3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                    +el++ k+kL+s+l+eV++rYkqy++qlq+v++sFe v glg+a+p+++l lka+S+hFrcLk+ai++q+
  XP_016467485.1 22 HELRRNKSKLISMLNEVYRRYKQYYQQLQAVVASFESVPGLGNAAPFAKLSLKALSKHFRCLKNAITDQL 91
                    899****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.9E-16389IPR006563POX domain
PfamPF075263.1E-282188IPR006563POX domain
PROSITE profilePS5007111.839133196IPR001356Homeobox domain
SMARTSM003891.0E-9136200IPR001356Homeobox domain
CDDcd000867.86E-12136197No hitNo description
SuperFamilySSF466893.89E-17138203IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-27139200IPR009057Homeodomain-like
PfamPF059207.5E-19153192IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDPSLEAPLS DDPQYSCGDG SHELRRNKSK LISMLNEVYR RYKQYYQQLQ AVVASFESVP  60
GLGNAAPFAK LSLKALSKHF RCLKNAITDQ LQYTGKSPNC ESDNSIPRAG NPAGKDIYFQ  120
RQAIHNAGFV DHQPVWRPQR GLPERAVIVL RAWLFDHFLH PYPTDSDKVM LAKQTGLSRN  180
QVSNWFINAR VRLWKPMVEE IHNLETRQAQ KAASQREGQN KNNPIEHFPT SNSLPSEHPS  240
TSSQQFHDVP SKRTRNNDPS ETHLGGDDQE TMNLSYDNFS PHSHVGIDQM SASAGNGGVS  300
LTLGLHQNNN VSIGLSGSFP RNAARRFGID ANNEGFMFGG FETQNRQLGR DNNIIGGQLL  360
HDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-15142200563Homeobox protein Meis2
3k2a_B4e-15142200563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610004.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_016467485.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_018628807.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM82e-90BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A1S3ZSV20.0A0A1S3ZSV2_TOBAC; BEL1-like homeodomain protein 9
STRINGXP_009610001.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.17e-82TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]