PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016467966.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 367aa    MW: 40552.2 Da    PI: 8.0964
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016467966.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08107131126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC+ f++ G C+y  +C+FaHg
  XP_016467966.1 107 YKTKLCCKFRA-GVCPYITNCNFAHG 131
                     9**********.*************8 PP
2zf-CCCH18.63.3e-06192212626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+ f+    C+yGd+C+F H+
  XP_016467966.1 192 CKKFYTEEGCPYGDSCTFLHD 212
                     99999999************7 PP
3zf-CCCH44.23.1e-14246271126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_016467966.1 246 WKTRICNKWETTGYCPFGSKCHFAHG 271
                     8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-8103137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-15104139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.812106133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0048106132IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5107131IPR000571Zinc finger, CCCH-type
SMARTSM003560.85186213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328186214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-7187214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-8188214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-10242276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-17242276IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-9245272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422245273IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-11246271IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MQFELGMVAW RKLTLYYRSY SPIEKGNMIQ DSAASSGGFG SWGPNFSDQA VWATEDDYRA  60
WNSNETSSNS QNRSGSEPPN KKSRNVQGLD PRDIVTSSSK AIGKMFYKTK LCCKFRAGVC  120
PYITNCNFAH GIEELRKPPP NWQDIVAAHE SERGGGAGGV LAVEPREEHQ IPILTSPDLR  180
GESQRSAKGR HCKKFYTEEG CPYGDSCTFL HDEQSRARES VAISVTPTVG GFGNNATGTT  240
LKPSNWKTRI CNKWETTGYC PFGSKCHFAH GVAELNRFGG GPVETEGKDS LFVPPDLKQA  300
GSSFKTTEST VPSTISALHT DVYHLGQGVQ VQRPSSIVER PGQRFFQKWK GPDKISKIYG  360
DWIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0140730.0BT014073.1 Lycopersicon esculentum clone 133173F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016467966.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like isoform X1
SwissprotQ9LQM31e-122C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1S3ZU960.0A0A1S3ZU96_TOBAC; zinc finger CCCH domain-containing protein 12-like isoform X1
STRINGXP_009767653.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-123C3H family protein