PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016467968.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 340aa MW: 37288.4 Da PI: 7.703

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016467968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.3e-08	80	104	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ G C+y +C+FaHg XP_016467968.1 80 YKTKLCCKFRA-GVCPYITNCNFAHG 104 9********.***********8 PP
2	zf-CCCH	18.7	3e-06	165	185	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ C+yGd+C+F H+ XP_016467968.1 165 CKKFYTEEGCPYGDSCTFLHD 185 99999999************7 PP
3	zf-CCCH	44.3	2.8e-14	219	244	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_016467968.1 219 WKTRICNKWETTGYCPFGSKCHFAHG 244 8************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.49E-8	76	110	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-15	77	112	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0048	79	105	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.812	79	106	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-5	80	104	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.85	159	186	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.328	159	187	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.2E-7	160	187	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-8	161	187	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-17	215	249	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-10	215	249	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.6E-9	218	245	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.422	218	246	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-11	219	244	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MIQDSAASSG GFGSWGPNFS DQAVWATEDD YRAWNSNETS SNSQNRSGSE PPNKKSRNVQ 60 GLDPRDIVTS SSKAIGKMFY KTKLCCKFRA GVCPYITNCN FAHGIEELRK PPPNWQDIVA 120 AHESERGGGA GGVLAVEPRE EHQIPILTSP DLRGESQRSA KGRHCKKFYT EEGCPYGDSC 180 TFLHDEQSRA RESVAISVTP TVGGFGNNAT GTTLKPSNWK TRICNKWETT GYCPFGSKCH 240 FAHGVAELNR FGGGPVETEG KDSLFVPPDL KQAGSSFKTT ESTVPSTISA LHTDVYHLGQ 300 GVQVQRPSSI VERPGQRFFQ KWKGPDKISK IYGDWIDDIE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014073	0.0	BT014073.1 Lycopersicon esculentum clone 133173F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629623.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 12-like isoform X2
Swissprot	Q9LQM3	1e-122	C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBL	A0A1S3ZU96	0.0	A0A1S3ZU96_TOBAC; zinc finger CCCH domain-containing protein 12-like isoform X1
TrEMBL	A0A1S3ZUC5	0.0	A0A1S3ZUC5_TOBAC; zinc finger CCCH domain-containing protein 12-like isoform X2
STRING	XP_009767653.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-123	C3H family protein