PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468581.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 224aa    MW: 24877.2 Da    PI: 9.2836
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468581.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-1869123256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_016468581.1  69 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 123
                     788899***********************************************98 PP
2HD-ZIP_I/II128.72.4e-4169159192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +lk
  XP_016468581.1  69 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENKRLQKELQELR-ALK 159
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1958126IPR009057Homeodomain-like
PROSITE profilePS5007117.13565125IPR001356Homeobox domain
SMARTSM003896.9E-1667129IPR001356Homeobox domain
PfamPF000468.5E-1669123IPR001356Homeobox domain
CDDcd000861.93E-1469126No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1769123IPR009057Homeodomain-like
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PfamPF021833.3E-10125159IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.1E-25125168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNRRQLVAEE AEEGAALSSP NSAISTFQVN IPIYRNGNML LGKRESEGDV ERWGNSSSRA  60
SDEEDGSARK KLRLTKEQSA FLEESFKEHN TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA  120
RTKLKQTEVD CEYLKKCCET LTEENKRLQK ELQELRALKS SQPFYMQLPA TTLTMCPSCE  180
RVVTATSSAA AASAAAAANT TLTLAKPGPF PFSPAQVQAP QAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468581.11e-163PREDICTED: homeobox-leucine zipper protein HAT14-like
RefseqXP_016468582.11e-163PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466654e-84HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3ZW401e-162A0A1S3ZW40_TOBAC; homeobox-leucine zipper protein HAT14-like
STRINGXP_009604043.11e-135(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-68homeobox from Arabidopsis thaliana