PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016468704.1

Common Name

WIN4

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 247aa MW: 28684 Da PI: 9.7903

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016468704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.6	8.1e-07	86	132	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h + Er RR++ ++++ L +llP +K +K +i++ A I++Lq XP_016468704.1 86 KHMIKERIRREKQKQSYLDLHKLLPMG-----TKGEKNAIVQTAASRIQELQ 132 68899******************97.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-10	78	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.62E-6	80	133	No hit	No description
PROSITE profile	PS50888	10.81	82	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-6	86	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0082	88	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEEFFQIQSS QTNNGEVLWF ENEAFLMNQS AFASFRNQSI EGFGVSGYGN VSANHRNMNK 60 RMMEFLKKSW IPKIGEVKME REKVHKHMIK ERIRREKQKQ SYLDLHKLLP MGTKGEKNAI 120 VQTAASRIQE LQKYKESLKK RNDELQMILA ESKKEEFEKA KIKVKINYPI YGIDSMLEVL 180 KCLKNCGTKA NAIQSSFSQQ EFSSILEIET KIGAAEVEKA VQNTLFETER NFRAHQLPMT 240 WLTSATE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB258537	0.0	AB258537.1 Nicotiana tabacum WIN4 mRNA for basic helix-loop-helix protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767584.1	0.0	PREDICTED: transcription factor bHLH92
TrEMBL	Q0KK48	0.0	Q0KK48_TOBAC; Basic helix-loop-helix protein
STRING	XP_009767584.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12463	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	7e-36	bHLH family protein

Publications ? help Back to Top
Kodama Y,Sano H Evolution of a basic helix-loop-helix protein from a transcriptional repressor to a plastid-resident regulatory factor: involvement in hypersensitive cell death in tobacco plants. J. Biol. Chem., 2006. 281(46): p. 35369-80 [PMID:16966334]