PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468771.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 252aa    MW: 28621 Da    PI: 4.8916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.5e-21106156155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr++  +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+ kl+g
  XP_016468771.1 106 KKFRGVRQRQ-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAAIVYDEAAVKLKG 156
                     59*****999.**********84....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.5E-9010252IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.35E-33106164No hitNo description
SMARTSM003808.6E-38107170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-30107165IPR001471AP2/ERF domain
PROSITE profilePS5103223.868107164IPR001471AP2/ERF domain
PfamPF008474.2E-13107156IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22107164IPR016177DNA-binding domain
PRINTSPR003673.1E-9108119IPR001471AP2/ERF domain
PRINTSPR003673.1E-9130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MIRNPVISPM DVPKTVKLSQ HIVTKNKHVP EQNDNSNFHS KFSQRVVRII LTDADATDSS  60
GDEGQDTVRR VKRHVTEINL MPSPNLIVCE KKRRLVSPDT DVTRRKKFRG VRQRQWGRWA  120
AEIRDPTRGK RVWLGTYDTP EEAAIVYDEA AVKLKGPDAV TNFPKVLTAD ITETESVTEG  180
GEKSENDVAL SPTSVLRNDD FTPFDDLGFC EVDAFGFDVD SLFRLPEFGM SEKYYGDEFG  240
EFDFDDFALE AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19106164160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19106164463ATERF1
3gcc_A1e-19106164463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191106KRRLVSPDTDVTRRKK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0588270.0AF058827.1 Nicotiana tabacum TSI1 (Tsi1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607079.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_016468771.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046821e-116PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1S3ZWU70.0A0A1S3ZWU7_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_009607079.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-39cytokinin response factor 4