PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468803.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 817aa    MW: 90518.5 Da    PI: 6.795
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-0885127347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
   XP_016468803.1  85 AWTRQEEESFFSALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 127
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1080132IPR009057Homeodomain-like
PROSITE profilePS5129313.41381132IPR017884SANT domain
SMARTSM007173.2E-682130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-584130IPR009057Homeodomain-like
PfamPF002493.3E-685127IPR001005SANT/Myb domain
CDDcd001678.93E-685128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MQMEPQVSLE CDRCLHPETL MCKDGVSDDT QHPAAAQPVI TSEDHPAAQL SVLIYDHAVT  60
QQVSLSQDQV MLQKPAKRQT RQWAAWTRQE EESFFSALRQ VGKNFEKITS RVQSKNKDQV  120
RHYYYRLVRR MNKLLGPELS LDAKNSKDTN AAMLRWWSLL EKSSCKASKL HLKPRRFKIF  180
IETLESQLLK DRKKNVRRRP SQGESSSTAA ASLSSHSRVS TNDSRTVKVV LLDNQDVQKF  240
GSGKGSSLKR HVTMGVNRSN TKVDSSPVKN ARHRRKIGSV STAAYKRWEK AAIAGVSLVA  300
DAAEHLERAT IDKDVGLVQN SQGINGFEHV GKDVPSLPTL SQNLLNETNL QSCMKLKLQL  360
FPVDEGTRRA LEMDNHNPYL ELTLSNRKKM SSILEHLNRK WGSSSIATGK LVLFPYHVQM  420
ENLVQSLRWT KDTTLSAADV YNLIGSPPVF RLRYGWFPNS ELGTFQAPLS STTPFTQNTN  480
TNITEEKNEE VLASSHGKLV RFSKEPLVSN PRMTVTSSST ELSGESNLQA TMGVNTYNSD  540
HNETLLMHRR DNGAITTEKQ VEMGSKNSAL SAGDWEDSLT NISVGDLLSD APDDEETDCI  600
ESTLPGSSHF LQQMPFSCDS FDAAIAAHIY KHQSKAESQM ALPPQASSIW NAEDTCDAFA  660
FQKDVAFRRT ANNSSSNVGA ENRQHISQSS SLLLDAGVKD LPGKMEPLTD ELAHEDPVDE  720
CHAQALGGST KDLSGLSDIY WPDSLGPLEL DAPSCRYHSE DLILSDNSLG GLNRLIASSL  780
DAFQNCSFFG LDKKEPGSTV EAVETTSLAD YKIGAKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6476041e-119EF647604.1 Solanum lycopersicum chromosome 9 clone C09HBa0116C14, complete sequence.
GenBankHG9755211e-119HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802690.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A1U7YV930.0A0A1U7YV93_NICSY; TSL-kinase interacting protein 1 isoform X2
STRINGXP_009802688.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1