PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016468834.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 251aa MW: 28529.9 Da PI: 9.7972

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016468834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	2e-10	27	72	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +++r+ R ++N+++ Lr+l+P++ +K++ a+i+ A+ YI++L XP_016468834.1 27 KHFAADRQKRVHLNDKYKALRSLVPNP-----TKNDRASIVGDAIMYINEL 72 79***********************.....9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-13	21	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.57E-8	21	76	No hit	No description
PROSITE profile	PS50888	13.783	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-8	27	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-11	27	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-6	29	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MNCKPPAVFV IRDTSCMTKD RENKEIKHFA ADRQKRVHLN DKYKALRSLV PNPTKNDRAS 60 IVGDAIMYIN ELKRTVNELK ILVDKKMCCR DRIKRQKSGP MNSADVKLRN EVDRSSLRSS 120 WLQRKTTNTN EVDRSSLRSS WLQRKTTNTE VDVRIVDDEV TVKLVQPKRI NCLLFVSKVL 180 DDLQLDLHHV AGGLIGDCYS FLFNSKICEG STVYAIAIAN KLIEIVDTEI SPCNTTSTPL 240 QGNFLSALAK F

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016468834.1	0.0	PREDICTED: transcription factor bHLH10-like isoform X1
Swissprot	Q84TK1	8e-67	BH010_ARATH; Transcription factor bHLH10
TrEMBL	A0A1S3ZWV6	0.0	A0A1S3ZWV6_TOBAC; transcription factor bHLH10-like isoform X1
STRING	XP_009784938.1	1e-166	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	2e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]