PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016468837.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 130aa MW: 14844.4 Da PI: 6.2734

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016468837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.6	8.6e-20	15	67	2	56
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g+++AeIrd +++ r++lg+f taeeAa+a+++a+ +++g+ XP_016468837.1 15 KYRGVRKRP-WGKFAAEIRDtSRQG--GVRVWLGTFTTAEEAARAYDKAAYSMRGN 67 8******.******44334..4***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.6E-29	15	76	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.14E-20	15	75	IPR016177	DNA-binding domain
SMART	SM00380	2.5E-30	15	80	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.813	15	74	IPR001471	AP2/ERF domain
CDD	cd00018	1.46E-26	15	75	No hit	No description
Pfam	PF00847	7.0E-14	15	66	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-11	16	27	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-11	40	56	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MDERGKIKDN TEEVKYRGVR KRPWGKFAAE IRDTSRQGGV RVWLGTFTTA EEAARAYDKA 60 AYSMRGNLAI LNYPEEYNLP SSSSHFNTGS SSIASSSVHE RNEQVLELEY LDDKLLEELL 120 DCDQHANKRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-35	1	130	1	129	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009594905.1	2e-93	PREDICTED: ethylene-responsive transcription factor ERF096-like
Refseq	XP_016468837.1	2e-93	PREDICTED: ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	5e-37	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1S3ZWR6	4e-92	A0A1S3ZWR6_TOBAC; ethylene-responsive transcription factor ERF096-like
STRING	XP_009594905.1	6e-93	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23220.1	1e-23	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]