PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468904.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 489aa    MW: 55150.5 Da    PI: 4.9623
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-10179200526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++tG Ck+G +CkF+H+
  XP_016468904.1 179 DCPYFMKTGVCKFGFNCKFNHP 200
                     7********************8 PP
2zf-CCCH23.41e-07206226727
                     SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                     ++++ +G CkyG  CkF+H++
  XP_016468904.1 206 QYYLTSGGCKYGKACKFNHSR 226
                     59*****************95 PP
3zf-CCCH40.93.3e-13247271226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG CkyG++C+F+H+
  XP_016468904.1 247 GEKECPYYMRTGSCKYGSNCRFHHP 271
                     7899********************9 PP
4zf-CCCH201.2e-06383409127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f +tG Cky  +CkF+H++
  XP_016468904.1 383 PGQPDCSYFIKTGDCKYKFNCKFHHPK 409
                     5789*********************96 PP
5zf-CCCH36.29.9e-12431455327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C+f++r+G+Ck+G+ CkF H++
  XP_016468904.1 431 QTVCSFYSRYGICKFGPACKFDHPE 455
                     678********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.2E-5173201IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-4174201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549174202IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-8179200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4180199IPR000571Zinc finger, CCCH-type
SMARTSM003561.4204226IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.329206227IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5207226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4207227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624245273IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7245272IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-11247271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7247272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5251270IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962382410IPR000571Zinc finger, CCCH-type
SMARTSM003560.065382409IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-5387411IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131428456IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6428455IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5429456IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9431455IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-4433455IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MEEAIEQQQI QNQNQNQSPK HTQEELGFES QTPQTSLLPS DLNIENPNQN QPNENDDEDE  60
MAMQIICEDL RDLVLNQALD KEREKEDLHH LDPEENGKIN ENEVENVEGN DDGWGDVGEY  120
GDYHYDEENR SGSVNGNDNE NDGEKENGYE GDSKEGGGFN ANNRIKKKFI YPLRPDAQDC  180
PYFMKTGVCK FGFNCKFNHP SRRKYQYYLT SGGCKYGKAC KFNHSREKGS ISPIAEFNFL  240
GLPIRPGEKE CPYYMRTGSC KYGSNCRFHH PDPTTVAGAD RSSGYNNGGA VPVQAASHPA  300
ASSWSSPRAL NDTAPYVPMM YPPTQGIPSP NTEWNGYQAP VYPTAEKRLP TPPAFGMNNP  360
ATKTNYYPRP LQPLLVEEYP ERPGQPDCSY FIKTGDCKYK FNCKFHHPKS RVSKANSSTL  420
NEKGLPLRPD QTVCSFYSRY GICKFGPACK FDHPENYVGS GSSTEYGFDQ PQQSQMSLGW  480
QGRELEVDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-103HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468904.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X4
SwissprotQ9STM41e-112C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S3ZX250.0A0A1S3ZX25_TOBAC; zinc finger CCCH domain-containing protein 67-like isoform X4
STRINGXP_009791086.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-106C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]