PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469116.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 151aa    MW: 17108.5 Da    PI: 10.1698
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469116.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.16e-1329107291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fY+e+A+  GFsv+k++s+++   ++    t++C +   ++++ ++          +  +Cka+l+  +++ g w+v+k++++HnH+l p
  XP_016469116.1  29 FYKEHAQLKGFSVVKRNSNNK-GGDTARYITYCCDRARIHKTKFTT----------KSNNCKARLTAVLDDFGCWHVSKVVHDHNHDLLP 107
                     9**************998887.555588999***999998887655..........7789***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1029107IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MENGFTKDDV VVGPISGMRF RDKDSLFAFY KEHAQLKGFS VVKRNSNNKG GDTARYITYC  60
CDRARIHKTK FTTKSNNCKA RLTAVLDDFG CWHVSKVVHD HNHDLLPSIS RLMAGHRSVC  120
DSLKRDLLTH DRSSIRPSKN IRRAEVQCGG P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469116.11e-110PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S3ZXU61e-108A0A1S3ZXU6_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_009760738.11e-108(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-09FAR1 family protein