PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016469210.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BES1

Protein Properties

Length: 668aa MW: 74549.3 Da PI: 5.4973

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016469210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	139.7	2.8e-43	68	213	1	136
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 ggs+r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ s+ + + +++g+ +++ ++ss++ XP_016469210.1 68 GGSRRCRPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSHSQVTGATGGTPTTMVTSSSSH 162 6899******************************************************************5555554555555555544444433 PP DUF822 96 ..........sslkssalaspvesysaspksssfpspssldsislasaasl 136 ++ + s ++ +++++++ ks+ +p +s +ds s+a ++++ XP_016469210.1 163 iptqhtppasLKGTPSGFQNTANHSACQVKSVFIPTSSPYDSSSTARSQTS 213 211000010233445678888888889999999999999998887755443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.7E-37	69	207	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	9.17E-176	239	662	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	4.2E-191	239	662	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	7.0E-105	250	654	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-70	265	279	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-70	286	304	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-70	308	329	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.2E-8	391	400	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	3.9E-70	401	423	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-70	474	493	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-70	508	524	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-70	525	536	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.9E-70	543	566	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.2E-8	546	556	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	3.9E-70	583	605	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.2E-8	634	648	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	2.2E-8	649	663	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MASEMQRYDT NEDDEEMDVK EEDDEDDDDE DKNGTFNAMA GFDGAHGSSS SNRFQHHQQY 60 QEPPTPQGGS RRCRPLEEKE RTKLRERQRR AITAKILAGL RRHGNYNLRV RADINDVIAA 120 LAREAGWVVL PDGTTFPSKS HSQVTGATGG TPTTMVTSSS SHIPTQHTPP ASLKGTPSGF 180 QNTANHSACQ VKSVFIPTSS PYDSSSTARS QTSAMVADGQ DTQNDPFLVG SGDSLDKQLG 240 VINMKSELVD ADGLVKQLRV LKSINVDGVM VDCWWGIVEA NAPQDYNWNG YKRLFQVVRE 300 HKLKIKVVMS FHECGGNIGD DVCIPLPHWV SEIGRSNPDI YFTDRAGRRN PECLSWGIDK 360 ERVLKGRTAV EVYFDYMRSF RVEFDEFFED GIISMVEVGL GPCGELRYPS NPVKHGWRYP 420 GVGEFQCYDQ YLLKSLRKAA EARGHSFWAR GPDNAGSYNS QPQETGFFCD GGDYDGYYGR 480 FFLNWYSQVL VDHADRVLSL AKLAFDGTCI AAKLSGIHWW YKTSSHAAEL TAGFYNPSNR 540 DGYVAIAAML KKHGAALNFK CAEMSMLEQA VDFSEALGDP EGLAWQVLNA AWDVSLPVCS 600 ENALLCHDRG GYNCLLEKAK LLNDPDGKHI FAFTYLRLGP LLIDGQNFME FERFVKRMHG 660 EAVLEFQS

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MASEMQRYDT NEDDEEMDVK EEDDEDDDDE DKNGTFNAMA GFDGAHGSSS SNRFQHHQQY  60
QEPPTPQGGS RRCRPLEEKE RTKLRERQRR AITAKILAGL RRHGNYNLRV RADINDVIAA  120
LAREAGWVVL PDGTTFPSKS HSQVTGATGG TPTTMVTSSS SHIPTQHTPP ASLKGTPSGF  180
QNTANHSACQ VKSVFIPTSS PYDSSSTARS QTSAMVADGQ DTQNDPFLVG SGDSLDKQLG  240
VINMKSELVD ADGLVKQLRV LKSINVDGVM VDCWWGIVEA NAPQDYNWNG YKRLFQVVRE  300
HKLKIKVVMS FHECGGNIGD DVCIPLPHWV SEIGRSNPDI YFTDRAGRRN PECLSWGIDK  360
ERVLKGRTAV EVYFDYMRSF RVEFDEFFED GIISMVEVGL GPCGELRYPS NPVKHGWRYP  420
GVGEFQCYDQ YLLKSLRKAA EARGHSFWAR GPDNAGSYNS QPQETGFFCD GGDYDGYYGR  480
FFLNWYSQVL VDHADRVLSL AKLAFDGTCI AAKLSGIHWW YKTSSHAAEL TAGFYNPSNR  540
DGYVAIAAML KKHGAALNFK CAEMSMLEQA VDFSEALGDP EGLAWQVLNA AWDVSLPVCS  600
ENALLCHDRG GYNCLLEKAK LLNDPDGKHI FAFTYLRLGP LLIDGQNFME FERFVKRMHG  660
EAVLEFQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdr_A	1e-142	239	661	20	444	Beta-amylase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ718373	0.0	AJ718373.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT43-4-510, cultivar Bright Yellow 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016469210.1	0.0	PREDICTED: beta-amylase 7-like isoform X2
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A1S3ZXN4	0.0	A0A1S3ZXN4_TOBAC; Beta-amylase
STRING	XP_009772614.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]