PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016469211.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BES1

Protein Properties

Length: 599aa MW: 67907.5 Da PI: 5.615

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016469211.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	125.9	5.1e-39	68	142	1	75
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskp 75 ggs+r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ s+ XP_016469211.1 68 GGSRRCRPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSHS 142 6899*****************************************************************954443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.8E-34	69	141	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.21E-181	156	593	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	1.4E-197	159	593	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.1E-107	165	585	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-70	196	210	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-70	217	235	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-70	239	260	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.5E-8	322	331	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.6E-70	332	354	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-70	405	424	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-70	439	455	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-70	456	467	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.6E-70	474	497	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.5E-8	477	487	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	1.6E-70	514	536	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	1.5E-8	565	579	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	1.5E-8	580	594	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MASEMQRYDT NEDDEEMDVK EEDDEDDDDE DKNGTFNAMA GFDGAHGSSS SNRFQHHQQY 60 QEPPTPQGGS RRCRPLEEKE RTKLRERQRR AITAKILAGL RRHGNYNLRV RADINDVIAA 120 LAREAGWVVL PDGTTFPSKS HSQVIDIHTK LQKRDFAGTP YIPVYVMLPL GVINMKSELV 180 DADGLVKQLR VLKSINVDGV MVDCWWGIVE ANAPQDYNWN GYKRLFQVVR EHKLKIKVVM 240 SFHECGGNIG DDVCIPLPHW VSEIGRSNPD IYFTDRAGRR NPECLSWGID KERVLKGRTA 300 VEVYFDYMRS FRVEFDEFFE DGIISMVEVG LGPCGELRYP SNPVKHGWRY PGVGEFQCYD 360 QYLLKSLRKA AEARGHSFWA RGPDNAGSYN SQPQETGFFC DGGDYDGYYG RFFLNWYSQV 420 LVDHADRVLS LAKLAFDGTC IAAKLSGIHW WYKTSSHAAE LTAGFYNPSN RDGYVAIAAM 480 LKKHGAALNF KCAEMSMLEQ AVDFSEALGD PEGLAWQVLN AAWDVSLPVC SENALLCHDR 540 GGYNCLLEKA KLLNDPDGKH IFAFTYLRLG PLLIDGQNFM EFERFVKRMH GEAVLEFQS

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MASEMQRYDT NEDDEEMDVK EEDDEDDDDE DKNGTFNAMA GFDGAHGSSS SNRFQHHQQY  60
QEPPTPQGGS RRCRPLEEKE RTKLRERQRR AITAKILAGL RRHGNYNLRV RADINDVIAA  120
LAREAGWVVL PDGTTFPSKS HSQVIDIHTK LQKRDFAGTP YIPVYVMLPL GVINMKSELV  180
DADGLVKQLR VLKSINVDGV MVDCWWGIVE ANAPQDYNWN GYKRLFQVVR EHKLKIKVVM  240
SFHECGGNIG DDVCIPLPHW VSEIGRSNPD IYFTDRAGRR NPECLSWGID KERVLKGRTA  300
VEVYFDYMRS FRVEFDEFFE DGIISMVEVG LGPCGELRYP SNPVKHGWRY PGVGEFQCYD  360
QYLLKSLRKA AEARGHSFWA RGPDNAGSYN SQPQETGFFC DGGDYDGYYG RFFLNWYSQV  420
LVDHADRVLS LAKLAFDGTC IAAKLSGIHW WYKTSSHAAE LTAGFYNPSN RDGYVAIAAM  480
LKKHGAALNF KCAEMSMLEQ AVDFSEALGD PEGLAWQVLN AAWDVSLPVC SENALLCHDR  540
GGYNCLLEKA KLLNDPDGKH IFAFTYLRLG PLLIDGQNFM EFERFVKRMH GEAVLEFQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bfn_A	1e-149	161	592	11	444	BETA-AMYLASE
1bya_A	1e-149	161	592	11	444	BETA-AMYLASE
1byb_A	1e-149	161	592	11	444	BETA-AMYLASE
1byc_A	1e-149	161	592	11	444	BETA-AMYLASE
1byd_A	1e-149	161	592	11	444	BETA-AMYLASE
1q6c_A	1e-149	161	592	11	444	beta-amylase
1wdp_A	1e-149	161	592	11	444	Beta-amylase
1wdr_A	1e-149	161	592	11	444	Beta-amylase
1wds_A	1e-149	161	592	11	444	Beta-amylase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-150	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016469211.1	0.0	PREDICTED: beta-amylase 7-like isoform X3
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A1S3ZY41	0.0	A0A1S3ZY41_TOBAC; Beta-amylase
STRING	XP_009772614.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]