PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469426.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 215aa    MW: 24349.4 Da    PI: 5.9167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-101354955
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + RR+++ +++  Lrel+P +      K++ a+iL  A++YI+ Lq
  XP_016469426.1 13 KKWRREQVDKRIKALRELIPGC-----DKVDQASILDDAIKYIQALQ 54
                    589******************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.506453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-101059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-81454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-121474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-131480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-101456No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTYLLLLFLR KQKKWRREQV DKRIKALREL IPGCDKVDQA SILDDAIKYI QALQQLHRIT  60
SMRMGLMSQE ADMSQAGMML MPQMEPTNGI MANQTVIPPF ALPTSSSLSG LQMVPQFQAP  120
FCPQFLQSTA YIMPLSPSFF TAPSPTMTQG RTIRDSSASN PGVDLLREYE EAIDYNNSNQ  180
GLFFSFPMLQ INYDIIILTL PFSASMNIVF LVTFD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758962.11e-157PREDICTED: transcription factor APG-like isoform X6
RefseqXP_016469426.11e-157PREDICTED: transcription factor APG-like isoform X4
TrEMBLA0A1S3ZYQ21e-156A0A1S3ZYQ2_TOBAC; transcription factor APG-like isoform X4
TrEMBLA0A1U7USB51e-156A0A1U7USB5_NICSY; transcription factor APG-like isoform X6
STRINGXP_009758957.11e-147(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-12phytochrome interacting factor 3