PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469456.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 250aa    MW: 27531.5 Da    PI: 8.7085
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469456.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.26.4e-39601601100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA ar+rdP+yG+v++i++lqqq+ +l+ael
  XP_016469456.1  60 PCGACKFLRRKCVRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALARVRDPIYGCVAHIFTLQQQVVSLQAEL 154
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_016469456.1 155 AYVQAR 160
                     **9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.74459161IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3760158IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSQLRTPSKP ANFANAKDTS YLRPWAIPVT FAIARKGHIC DITIARKCRI CDQGAGGSGP  60
CGACKFLRRK CVRGCIFAPY FDSDQGTAHF AAVHKVFGAS NASKLLLRIP AHKRLDAVVT  120
LCYEALARVR DPIYGCVAHI FTLQQQVVSL QAELAYVQAR LSTLQHLPMR QGPEPQSPIT  180
PTALQSSSDI FCTTSSISSS SNNMEYPQFD ITAGLSDSFD DQELENFELH TLAREFVSRH  240
LPGVRFRPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-36561547104LOB family transfactor Ramosa2.1
5ly0_B9e-36561547104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469456.10.0PREDICTED: LOB domain-containing protein 19-like
SwissprotO813224e-65LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1S3ZYS90.0A0A1S3ZYS9_TOBAC; LOB domain-containing protein 19-like
STRINGXP_009803301.11e-144(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-64LOB domain-containing protein 31