PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469681.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 187aa    MW: 21211.1 Da    PI: 8.7099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-121564555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                     + +E++RR++++  ++eL +l+P++  ++s+  ls  + Le+A +YIk+Lq
  XP_016469681.1 15 RKTIEKNRRNQLKALYSELNSLVPHQ--QHSREvLSLPDQLEEAANYIKKLQ 64
                    6789*********************6..488889*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.0961063IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-101279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-111383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-81664IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-51868No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEQCNNPSSV SKADRKTIEK NRRNQLKALY SELNSLVPHQ QHSREVLSLP DQLEEAANYI  60
KKLQINLERM RQRKESLTVD GNSSSIRSSS VRKETLPLLP HLEIHHVDSS LDVVLITRID  120
DQFIFNDIIR MLHEESLEVI NASYTLIGDT IFHSIHSKVG ECAKGYRATR ISDRLKKIVG  180
SGHSGAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792759.11e-135PREDICTED: uncharacterized protein LOC104239707
RefseqXP_016469681.11e-135PREDICTED: uncharacterized protein LOC107792022
TrEMBLA0A1S3ZZE11e-134A0A1S3ZZE1_TOBAC; uncharacterized protein LOC107792022
TrEMBLA0A1U7Y0J41e-134A0A1U7Y0J4_NICSY; uncharacterized protein LOC104239707
STRINGXP_009792759.11e-134(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-43bHLH family protein