PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016469787.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 90aa MW: 10140.5 Da PI: 8.5138

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016469787.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.7	3.5e-07	23	57	20	54
HHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 20 feeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++L++llP+ + +s K s + +L+++++YI+sL XP_016469787.1 23 VSKLQQLLPEiR-TRRSSKASASKVLQETCNYIRSL 57 589*****77.799****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.55	3	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.2E-7	18	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-7	18	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-4	23	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MSSRRSRDSG SSRISDDQMI ELVSKLQQLL PEIRTRRSSK ASASKVLQET CNYIRSLNRE 60 MDDLSDRLSQ LLSTVDADSP EAAIIRSLII

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269\|PubMed:16527868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016469787.1	2e-55	PREDICTED: transcription factor PRE1-like
Swissprot	Q9LJX1	3e-39	PRE5_ARATH; Transcription factor PRE5
TrEMBL	A0A1S3ZZB3	5e-54	A0A1S3ZZB3_TOBAC; transcription factor PRE1-like
STRING	XP_009758713.1	2e-46	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA353	24	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39860.1	2e-19	bHLH family protein