PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016469953.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 320aa    MW: 36000.3 Da    PI: 4.7989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016469953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-102452851055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_016469953.1 245 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 285
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-14234301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.907235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-12244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-11244289No hitNo description
PfamPF000109.4E-8245285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSEGEWSSFS GMYSTDQDAK LMSQLLVSCS LSNELPISSL LTSYESTMSS HNSINFFSQG  60
SSYNGCNSFP FSPLPSNESS YYPSHFRSNV MIRNDSSITM DRYGILVGGE NIISLPSDQV  120
LTNYNAMIEV DDFLINQDVS NIDSMESGEN TIEGDVEDKV DSPPDSFRKR SRRLVGDVIP  180
NNKRSVKLKK TSCEKDEENK TVIHRQNSVI SCCSEDESVN VSHELTRKTR ATRGSATDPQ  240
ILYARKRRER INERLRILQN LVPNGTKVDI STMLEEAVQY VKFLQLQIKL LSSDDLWMYA  300
PIAYNGMDIG LNLKMATPES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469953.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLA0A1S3ZZZ80.0A0A1S3ZZZ8_TOBAC; transcription factor bHLH84-like
STRINGXP_009611804.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-51bHLH family protein