PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470053.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WOX
Protein Properties Length: 186aa    MW: 21084.3 Da    PI: 6.8018
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665e-213494257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r+R+t+t+ ql++Le+ F + n +ps++++++++ +l    +++e++V++WFqNrRa+ k+
  XP_016470053.1 34 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKDITFELsqhgQISETNVYNWFQNRRARSKR 94
                    89*****************99**************************************97 PP
2Wus_type_Homeobox101.55.9e-333496365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       r+RWtPtp Q++iLe+++++G  tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq
     XP_016470053.1 34 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKDITFELSQHGQISETNVYNWFQNRRARSKRKQ 96
                       79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.5763095IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-173297IPR009057Homeodomain-like
SuperFamilySSF466891.33E-183297IPR009057Homeodomain-like
SMARTSM003896.6E-143299IPR001356Homeobox domain
CDDcd000861.00E-123496No hitNo description
PfamPF000467.4E-193494IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
KIEQHALPAT SGTRLGNLYC DPLITSAGHR ISGRQRWTPT PVQLQILERI FDQGNGTPSK  60
QKIKDITFEL SQHGQISETN VYNWFQNRRA RSKRKQQGGG AMNNVESEVE TEVESPNEKK  120
TKPEDLQSSH MPTSRAEEGN SNPAGSFDQL SFYAMSNPRM GQLIEKMEEP TSYHPYLHTE  180
NYDMTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470053.11e-139PREDICTED: WUSCHEL-related homeobox 8-like, partial
SwissprotO817883e-55WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A1S4A0901e-138A0A1S4A090_TOBAC; WUSCHEL-related homeobox 8-like
STRINGXP_009801335.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56752437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.14e-51WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]