PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470175.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 170aa    MW: 17694.6 Da    PI: 8.394
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.11.3e-12730124
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                    C+gCrt+L YPrGA++V+Ca+C++
  XP_016470175.1  7 CSGCRTILLYPRGASNVCCAVCNA 30
                    **********************97 PP
2zf-LSD145.71e-144670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggCrtlL+ PrGA+sVRC++C+tV
  XP_016470175.1 46 CGGCRTLLMHPRGASSVRCSCCHTV 70
                    ************************9 PP
3zf-LSD140.25.5e-1384107124
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                     Cg+Cr +L+YP GApsV+Ca+C+ 
  XP_016470175.1  84 CGNCRMMLMYPCGAPSVKCAICHY 107
                     **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.8E-12432IPR005735Zinc finger, LSD1-type
PfamPF069434.1E-11730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.2E-174373IPR005735Zinc finger, LSD1-type
PfamPF069434.8E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.0E-1181110IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-1284108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MQSQLMCSGC RTILLYPRGA SNVCCAVCNA LTPVPPPGME MAQLICGGCR TLLMHPRGAS  60
SVRCSCCHTV NLVPGPNQFA HVYCGNCRMM LMYPCGAPSV KCAICHYITN VNAGDGRVHV  120
PSGTATPASG SSSSTAKARS QNQTVVVQNP MSVDESGKLV SNVVVGVTTT
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0364910.0KT036491.1 Solanum tuberosum cultivar Kexin-4 LSD1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758570.11e-120PREDICTED: protein LSD1-like
RefseqXP_009758571.11e-120PREDICTED: protein LSD1-like
RefseqXP_016470175.11e-120PREDICTED: protein LSD1-like
RefseqXP_016470177.11e-120PREDICTED: protein LSD1-like
SwissprotQ6ASS23e-65LOL3_ORYSJ; Protein LOL3
TrEMBLA0A1S4A0Q51e-118A0A1S4A0Q5_TOBAC; protein LSD1-like
TrEMBLA0A1U7V9Q41e-118A0A1U7V9Q4_NICSY; protein LSD1-like
STRINGXP_009758570.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.76e-57LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]