PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016470596.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 175aa MW: 20547.8 Da PI: 9.5076

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016470596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.8	4.1e-13	75	155	13	80
TT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 13 sgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 ++r+ +p +f +e +++k +s++++++d++g+ e+k++ +++ +r+vl kGW++ v an+L+ gD+v XP_016470596.1 75 LSRFLIPGTFDKELlknlsgeerikleDNNKDKSFKVKVMDQEGNFHEMKFTRWQSLKRFVLNKGWNNLVVANNLQKGDTV 155 46788888888777888888888888877888**********999999999************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.559	63	175	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-13	67	168	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-15	69	168	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	4.7E-10	76	155	IPR003340	B3 DNA binding domain
CDD	cd10017	1.54E-12	105	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MTRIKLFGKE IEVEEEPKTI KLFGIRIFPC NVEPEQEQEN LPPTNMYRAI RLAGGSRLVY 60 IGRKKAEESD INPELSRFLI PGTFDKELLK NLSGEERIKL EDNNKDKSFK VKVMDQEGNF 120 HEMKFTRWQS LKRFVLNKGW NNLVVANNLQ KGDTVDLWHF RIHLQLCFAI NIIKN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016470596.1	1e-126	PREDICTED: putative B3 domain-containing protein At3g49610
TrEMBL	A0A1S4A201	1e-125	A0A1S4A201_TOBAC; putative B3 domain-containing protein At3g49610
STRING	XP_009605370.1	1e-124	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11679	11	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05930.1	1e-08	B3 family protein