PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016471010.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 241aa    MW: 27011.4 Da    PI: 6.9798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016471010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000383684153
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                    +r  + erE+  R+++N+ f  L   l  +     + + Ka+iL +A +++k+
  XP_016471010.1 36 KRIHKAEREKLKREHLNELFLGLANALELS----EQMNGKASILNEAARFVKD 84
                    688899*********************998....68899********999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.7E-632106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1032105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.4293585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDTESPAPIH EKDTTAAETS LDSSHLGKKN QKKAPKRIHK AEREKLKREH LNELFLGLAN  60
ALELSEQMNG KASILNEAAR FVKDILSQIK HLRTENTTLL SESQYLSVEK KELQDETSAL  120
EAEIGRLQNE VKAREAKTNL DLNLAPPEIQ HPEFALQNNY MRLPASAHAF QDSQIMNPAY  180
VFPFSSNPQV HLAPDATKST STPTSTVKKP QARYPTPADV WPSQIFEKRP RLLGQEVQDG  240
A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4230781e-150DQ423078.2 Nicotiana tomentosiformis cultivar TA3349 DNA-binding protein (At3g47640) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770548.11e-177PREDICTED: transcription factor bHLH47-like
RefseqXP_009770549.11e-177PREDICTED: transcription factor bHLH47-like
RefseqXP_016471010.11e-177PREDICTED: transcription factor bHLH47-like
RefseqXP_016471011.11e-177PREDICTED: transcription factor bHLH47-like
TrEMBLA0A1S4A3651e-176A0A1S4A365_TOBAC; transcription factor bHLH47-like
TrEMBLA0A1U7VVZ41e-176A0A1U7VVZ4_NICSY; transcription factor bHLH47-like
STRINGXP_009770548.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43071934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.36e-43bHLH family protein