PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016471159.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 376aa    MW: 41171.4 Da    PI: 9.1238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016471159.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16166212455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  XP_016471159.1 166 VHNQSERRRRDRINQKMKALQRLVPNA-----SKTDKASMLDEVINYLKQLQ 212
                     6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.752162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-19165235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-14166212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-18167225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-16167216No hitNo description
SMARTSM003537.2E-17168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSQTKPTLGR AGDTLESIVH QATYHGQINQ TSIQNYDQNQ NLKIGMCVGK WGESSQHQMA  60
APPGGATVLA KKRMRSESDP KYGGKLVGED EYAELSACAS ASATFCREND TNMVTWPSFD  120
ESSRSIKSKT SCDEDSACHD GGSENKEEEH ETKRSNSSRR SRAAVVHNQS ERRRRDRINQ  180
KMKALQRLVP NASKTDKASM LDEVINYLKQ LQAQVQLMNS VRNMAPQMMM PLGMHQHIQM  240
SLLARMGMGV GLGMGMGMFD MTALARAAAA AAHQSLTTHP LIHTNPIANP TNPFIPPAFA  300
MPAAPAIPSA AQANTVGRAT TAVTPPPYSA FPTQPMDMEY FNNMAALYRQ QANNHSTQTT  360
GYKLNQGNLN IQGQRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754422e-81HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016471159.10.0PREDICTED: transcription factor UNE10-like isoform X3
RefseqXP_016471160.10.0PREDICTED: transcription factor UNE10-like isoform X3
TrEMBLA0A1S4A3J70.0A0A1S4A3J7_TOBAC; transcription factor UNE10-like isoform X3
STRINGXP_009771453.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-31bHLH family protein