PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016471238.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 180aa MW: 21061.4 Da PI: 5.631

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016471238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.5	3.4e-14	81	130	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +++rr+++NRe+ArrsR RK+ ++eL v L +eN++L ++l++ ++ XP_016471238.1 81 RKQRRMISNRESARRSRMRKQRHLDELWAQVVWLRNENHQLLDKLNHASE 130 689***************************************99998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-14	77	141	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.381	79	142	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.88E-13	81	130	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-11	81	153	No hit	No description
Pfam	PF00170	7.6E-12	81	130	IPR004827	Basic-leucine zipper domain
CDD	cd14702	8.22E-18	82	131	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MQPTDVTDFY CLLPSNSTQY PSQSSTNYNA STFQLNRLLN PLYHLQITPQ VQEFNPQLTC 60 FNSNSTSDEA DEQQLNLINE RKQRRMISNR ESARRSRMRK QRHLDELWAQ VVWLRNENHQ 120 LLDKLNHASE RQDHVLEENA QLKKEASELR QMITDMQLSS PCPSLRALED EPCSGLSQNE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	100	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00389	DAP	Transfer from AT3G30530	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792002.1	1e-130	PREDICTED: basic leucine zipper 43-like
Refseq	XP_016471238.1	1e-130	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	4e-42	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A1S4A3M1	1e-129	A0A1S4A3M1_TOBAC; basic leucine zipper 43-like
TrEMBL	A0A1U7XIX3	1e-129	A0A1U7XIX3_NICSY; basic leucine zipper 43-like
STRING	XP_009792002.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA947	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	1e-51	basic leucine-zipper 42

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]