PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016471479.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 257aa MW: 29313.1 Da PI: 7.9462

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016471479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.3	9.3e-30	11	65	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wt++LH+ F +av+qLGG+e+AtPk il++m+++gLt+ hvkSHLQkYR+ XP_016471479.1 11 KERLKWTQQLHDLFEKAVTQLGGPERATPKGILKVMGIEGLTIFHVKSHLQKYRM 65 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.02E-16	9	65	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-27	9	66	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-23	11	66	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-8	13	64	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-15	97	141	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGSNRSDCSS KERLKWTQQL HDLFEKAVTQ LGGPERATPK GILKVMGIEG LTIFHVKSHL 60 QKYRMSKFVR EDPVIGKFER RSISEILPNF SATAGAQLNE ALQMHMDARR RLSDHLEVQR 120 NLRMKLEAQG RFLDGIMEER KAHASSCRLS CKSYSYSPLS LPSLCDELSE SNVKELESDS 180 EVDRNEIRSV DPECQARKRS RIDEDVILSH RYNSNVAYSS LTSGPQNHPY SSPHELPWST 240 LATYQSPHMP AFYDSLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-21	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-21	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-21	11	68	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	11	68	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	11	68	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	11	68	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-21	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-21	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-21	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-21	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-21	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-21	11	68	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799173.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
TrEMBL	A0A1U7Y7T1	0.0	A0A1U7Y7T1_NICSY; protein PHR1-LIKE 1-like
STRING	XP_009799173.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10101	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-46	G2-like family protein