PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016471804.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 296aa MW: 32369.5 Da PI: 6.6109

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016471804.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00016	227	265	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_016471804.1 227 RKEKLGDRITSLHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 265 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.14E-7	210	269	No hit	No description
PROSITE profile	PS50888	11.141	215	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-10	225	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-8	229	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MMAGNPTNWW SMLMNGNNMH QQSEHISSSS SSSHFYGASN SSLDDNSTQD FSARSLSQLL 60 LSGFSGDEEK FGISPFHQAG NSEDQNLNSV HIPSASNFRV NPIDDVKPEL GQLYDYHHHV 120 QNEFQASLQE KLELPTEFTK HAAYTCRSLL ANSWSQHQDM PSPASSCITT GLLNHNVLNF 180 SSNKNSKGEL KHQHPDNSSE CNSTSSGGIS KKARVQHSSG QPSLKVRKEK LGDRITSLHQ 240 LVSPFGKTDT ASVLSEAIGY IRFLQDQIQA LSSPYLGNAS GSMGHVPQQS FLDGSS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016471804.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X2
TrEMBL	A0A1S4A5D3	0.0	A0A1S4A5D3_TOBAC; transcription factor bHLH68-like isoform X2
STRING	XP_009608011.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	3e-37	bHLH family protein